
This file contains some brief info about how to run various simple
VoxBo tests.  Over time, it will grow into a genuine testsuite.  Each
separate test is in its own directory.  In each directory, do the
following:
  sh setup.sh        # create files, etc.
  sh runtest_XXX.sh  # actually run the test, there may be several of these
  sh clean.sh

----------------------------------------------
ITEMS TO ADD
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--> big messy GLM with all kinds of filtering, mixed tes/nifti, etc.
--> several simple glms
--> use vbimagemunge with test data to show that manipulations of raw
    data have expected effect on results
--> script that invokes darned near every image processing algo on
    certain files
--> use vbconv/vbcmp/vbimagemunge to make sure file formats work as
    expected, including flip-flopping endianness

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TEST THE NEW SCRIPTING SYSTEM
----------------------------------------------
# edit testscript.ssd, change the working directory
submit-sequence -s testscript.sss -d testscript.ssd:test1



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TEST VBPREP
----------------------------------------------
# vbpreptest.vbp should touch files called a.cub and b.cub
# in the specified directory
vbprep vbpreptest.vbp

----------------------------------------------
GLM tests full, quick, random, etc.
----------------------------------------------
# in an empty directory:
vbsim -d 64 64 45 180 -o big1.tes
vbsim -d 64 64 45 180 -o big2.tes
vbsim -d 64 64 45 180 -o big3.tes
vbsim -d 12 12 4 20 -o small1.tes
vbsim -d 12 12 4 20 -o small2.tes
vbsim -d 12 12 4 20 -o small3.tes
cat > test.glm<< EOF
pieces 20
audit yes
email nobody@nowhere.com

glm big_glm1
gmatrix
kernel
noisemodel
meannorm
driftcorrect
highs 1
lows 4
orderg 720
scan big1.tes
scan big2.tes
scan big3.tes
end

glm small_glm1
gmatrix
kernel
noisemodel
meannorm
driftcorrect
highs 1
lows 4
orderg 720
scan small1.tes
scan small2.tes
scan small3.tes
end

EOF

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VBREGION
----------------------------------------------
vbsim -d 53 63 46 0 -n 0 50 8 -o region.cub
vbregion -t 3 region.cub


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----------------------------------------------



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